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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015796958.1_cds_XP_016452498.1_4619
CDS Infomation

[gene=LOC107777037] [db_xref=GeneID:107777037] [protein=probable E3 ubiquitin-protein ligase HIP1 isoform X2] [protein_id=XP_016452498.1] [location=join(203390..204017,204700..205082,205201..205299,205440..205607,207261..207407)] [gbkey=CDS]
Sequence

ATGGGGCAAAGGAGCATGTCATACAATAATCAAATAATTGATTTGGAAGCAGATCAGCGG
AGTCAAGAGTATATCCGACCGGAGCCTTGTGTGTTGTACAGGAGCTTTATAGCTTTTCCA
CATCCAAATGTCCACACTATAGTATCAGCTCTAGGAAACAGTGCTAATTTCTATTTGCAC
CATCTACCAGACCCTCGAGAAGGCGGTTTACGTTATGGGATGTCATCGTCCAATGGGGTT
CAACCGCGCCATCCTGCCACCAACGTTGACACAGCAATTGCAACATCATCAAATCACTAT
AACCCTAGCGTGGCTGCTCCATCTGCATCGACAGATGTTCCAGATCCAGTAAATCATGGG
TTACATGATCAGCGTCCATTCTCCAGCACTCACGGCATCCTTGGAATTAGTGCACACAGT
TTTGGTAGGAATGATCCGTATATGGACAGTGTCAGAGGCTCAGTGAAGCAAAAGAATCAT
TCTGCTTTGGCGGGACCTAATACTTCCGTCATCCCAGTGATCACAAGAGCACGTGAATCT
GATGTTTCTTTGACAGATACTGTATCATTTCCTCCATATGGAGGGAATGGGTCATCATCG
TCCATTGAAGATGGAGTACAGAGAAGTGGTGGCTGTATGGATGCTGGAAACATGGGTGTG
CAAGGTTATCAAGTAACTGCCAGCAACGGAGGTTTGACTAGTTTTCTGTATCCACCCATT
CCTCACGGACCACCCAACCATCATCACCCGCCACCTGATACGCAATGTGTGGGGGGCCGC
AATATGAGCTTCTCTCCGCAGATGACATCATCTTCACACAGAAATCTACGAAATAGTTCG
TCCAATCACACTAATAATCCATTCCAAGGTGTTGTAGACGGAGGGTCTAGATATATCGGA
CCCTTCCCACCGACTGGCTTTAGGTTTTACAGACCTCTTCGAAGGGAATTCATGCTTGAA
ACAAATACTCAACAAGGCAACCTCCCTAACATGAGAGTTTTGCTAGAAAATGGAGTGGCA
ATGCTGGATGTTCCTGGGTACCATGAAGTTGGTGATGCTGTTGATCAGCACAGAGATATG
CATTTGGACATAGATCACATGTCTTATGAGGAACTTCTTGCACTGGGGGAGCAAATTGGC
GATGTGACCACTGGTTTATCAGAGGAAGCCATTGTTAGCAATTTGAAAACGAGAATATTT
TTGTCTTCCGAGACTCCTTGCCCTCATGAAAGTGCTACATGCTTAGATCACAAAACAGAT
TTCTGTGTCATATGCCAGACTGATTACGTAGACCAAGAAAAGATTGGCATTCTTGAGTGC
AGGCACGAGTATCATGAAGAGTGCGTAAAGAAATGGTTGATTGGGAAGAATACTTGTCCT
ATCTGCAAATCCACAGCATTGTTTACAGAGAAACTCGAATTGTGA

Peptide Sequence

PEP ID

XP_016452498.1
PEP Infomation

PREDICTED: probable E3 ubiquitin-protein ligase HIP1 isoform X2 [Nicotiana tabacum]
Sequence

MGQRSMSYNNQIIDLEADQRSQEYIRPEPCVLYRSFIAFPHPNVHTIVSALGNSANFYLH
HLPDPREGGLRYGMSSSNGVQPRHPATNVDTAIATSSNHYNPSVAAPSASTDVPDPVNHG
LHDQRPFSSTHGILGISAHSFGRNDPYMDSVRGSVKQKNHSALAGPNTSVIPVITRARES
DVSLTDTVSFPPYGGNGSSSSIEDGVQRSGGCMDAGNMGVQGYQVTASNGGLTSFLYPPI
PHGPPNHHHPPPDTQCVGGRNMSFSPQMTSSSHRNLRNSSSNHTNNPFQGVVDGGSRYIG
PFPPTGFRFYRPLRREFMLETNTQQGNLPNMRVLLENGVAMLDVPGYHEVGDAVDQHRDM
HLDIDHMSYEELLALGEQIGDVTTGLSEEAIVSNLKTRIFLSSETPCPHESATCLDHKTD
FCVICQTDYVDQEKIGILECRHEYHEECVKKWLIGKNTCPICKSTALFTEKLEL

Transcript Sequence

Gene sequence data has not been registered.